Table 1 Summary of our re-analysis of 28 published phylotypes proposed to represent novel high-level eukaryotic diversity
From: How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys
Phylotype | GenBank accession number | Taxonomic status proposed after our re-analysis | Reference |
|---|---|---|---|
Previously undetected chimeric sequences | |||
CS_E042 | AY046663 | 1/2 = CS_E028 (Dinoflagellata)/2/2 = CS_E022 (Jakobidae) | Edgcomb et al. 2002 [7] |
LEMD145 | AF372805 | 1/2 = undet. Ascomycota/2/2 = LEMD003 (Gregarinia) | Dawson & Pace 2002 [5] |
LEMD119 | AF372777 | 1/2 = undet. Apicomplexa/2/2 = LEMD003 (Gregarinia) | Dawson & Pace 2002 [5] |
Misplaced fast-evolving phylotypes | |||
LEMD267 | AF372778 | Lobosea (Amoebozoa) | Dawson & Pace 2002 [5] |
C1_E016 | AY046618 | Dinoflagellata (Alveolata) | Edgcomb et al. 2002 [7] |
C3_E014 | AY046873 | Apicomplexa (Alveolata) | Edgcomb et al. 2002 [7] |
C1_E017 | AY046619 | Apicomplexa (Alveolata) | Edgcomb et al. 2002 [7] |
C2_E016 | AY046806 | Apicomplexa (Alveolata) | Edgcomb et al. 2002 [7] |
BOLA267 | AF372774 | Apicomplexa (Alveolata) | Dawson & Pace 2002 [5] |
LEMD134 | AF372806 | Apicomplexa (Alveolata) | Dawson & Pace 2002 [5] |
LEMD003 | AF372797 | Apicomplexa (Alveolata) | Dawson & Pace 2002 [5] |
CS_E036 | AY046668 | Labyrinthulata (Stramenopiles) | Edgcomb et al. 2002 [7] |
LEMD052 | AF372744 | Cercozoa (Rhizaria) | Dawson & Pace 2002 [5] |
Phylotypes identified with an increasing molecular sampling of described organisms | |||
AT4-11 | AF530526 | Apusomonadidae (Apusozoa) | López-García et al. 2003 [8] |
BOLA187 | AF372745 | 'Mastigamoeba invertens group' | Dawson & Pace 2002 [5] |
BOLA366 | AF372746 | 'Mastigamoeba invertens group' | Dawson & Pace 2002 [5] |
CS_E022 | AY046649 | Jakobidae (Excavates) | Edgcomb et al. 2002 [7] |
C1_E027 | AY046628 | 'Retortamonas/Carpediemonas group' (Excavates) | Edgcomb et al. 2002 [7] |
Phylotypes that passed our checking procedure: | |||
DH145-EKD11 | AF290065 | possibly novel high-level lineage | López-García et al. 2001 [3] |
DH148-5-EKD18 | AF290084 | possibly novel high-level lineage | López-García et al. 2001 [3] |
C3_E012 | AY046842 | possibly novel high-level lineage | Edgcomb et al. 2002 [7] |
C2_E026 | AY046816 | possibly novel high-level lineage | Edgcomb et al. 2002 [7] |
CS_R003 | AY046643 | possibly novel high-level lineage | Edgcomb et al. 2002 [7] |
BOLA212 | AF372767 | possibly novel high-level lineage | Dawson & Pace 2002 [5] |
BOLA458 | AF372771 | possibly novel high-level lineage | Dawson & Pace 2002 [5] |
BOLA048 | AF372821 | possibly novel high-level lineage | Dawson & Pace 2002 [5] |
BAQA065 | AF372825 | possibly novel high-level lineage | Dawson & Pace 2002 [5] |
AT4-68 | AF530543 | possibly novel high-level lineage | López-García et al. 2003 [8] |