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Table 2 Sequences of individual clones from the randomized U5-IR loop librarya.

From: Selection of functional mutations in the U5-IR stem and loop regions of the Rous sarcoma virus genome

Clone ID

87

88

89

90

91

92

93

94

95

Wild Type

G

C

A

G

A

A

G

G

C

IRL-1b

G

C

A

G

A

A

G

G

C

IRL-2b

G

C

A

G

A

A

G

G

C

IRL-3b

G

C

A

G

A

A

G

G

C

IRL-4b

G

C

A

G

A

A

G

G

C

IRL-5b

G

C

A

G

A

A

G

G

C

IRL-6

G

C

C

C

G

A

U

G

C

IRL-7

G

C

G

G

C

U

U

G

C

IRL-8

G

U

A

U

A

C

G

G

C

IRL-9

G

U

C

U

C

A

G

G

C

IRL-10

G

U

U

A

C

G

A

G

C

IRL-11

G

U

C

A

C

A

A

G

C

IRL-12

G

U

U

G

A

G

T

G

C

IRL-13

G

U

U

A

U

G

A

G

C

IRL-14

G

U

G

A

U

G

A

G

C

IRL-15

G

U

A

A

A

U

G

A

C

IRL-16

G

U

U

A

A

A

U

A

C

IRL-17

G

U

A

G

U

U

A

A

C

IRL-18

G

U

A

U

A

G

G

A

C

IRL-19

G

U

U

U

G

A

A

A

C

IRL-20

G

A

U

G

C

G

A

U

C

IRL-21

G

A

A

G

A

A

G

U

C

IRL-22

G

A

U

U

A

A

C

U

C

IRL-23

A

G

U

G

C

A

U

C

U

IRL-24

C

G

G

G

C

G

A

U

G

IRL-25

C

U

C

G

C

G

A

A

G

IRL-26

U

U

A

U

U

A

C

A

A

IRL-27

U

U

G

C

G

C

A

G

A

IRL-28

U

C

U

G

C

A

U

G

C

IRL-29

U

C

A

G

A

A

C

G

C

IRL-30

G

C

U

U

G

U

G

A

C

IRL-31

C

G

C

C

U

A

C

A

C

IRL-32

G

C

G

A

U

G

G

U

C

IRL-33

C

A

U

A

C

C

C

U

C

IRL-34

C

C

U

A

U

G

G

U

G

IRL-35

C

C

U

G

C

G

A

C

G

IRL-36

C

C

A

U

A

G

G

A

G

IRL-37

C

G

U

C

G

U

A

U

U

  1. aIndividual clones were recovered after five rounds of infection and sequenced as described under "Methods". bwild type sequence found in the clone.