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Table 4 Genes where all branches have ω > 1 based on the one ratio model.

From: Comparative analysis of protein coding sequences from human, mouse and the domesticated pig

  

Branch length

  

Number of substitutions

Gene

L

Pig

Mouse

Human

Kappa

Omega

P(N)

P(S)

M(N)

M(S)

H(N)

H(S)

NM_031268

72

0.096

0.102

0.128

2.844

1.481

5.7

1.3

6.0

1.3

7.6

1.6

NM_032353

97

0.105

0.269

0.104

3.183

1.206

7.6

2.6

19.5

6.6

7.5

2.6

XM_165930a

102

0.231

0.370

0.162

8.593

2.127

20.5

3.1

32.8

4.9

14.4

2.2

XM_168460a

74

0.176

0.527

0.132

2.665

1.121

8.7

4.3

26.1

12.9

6.5

3.2

  1. Three-species alignments where the average dN/dS ratios over sites and lineages are larger than one. (Gene) Genbank accession number of the human gene. (L) Length of sequence alignment in codons, P(N) number of nonsynonymous substitutions in pig, P(S) number of synonymous substitutions in pig, M(N), M(S) and H(N), H(S) represents the mouse and human lineage respectively. (a)Possible pseudogene in human lineage.