Fig. 1
From: Nuclear genetic codes with a different meaning of the UAG and the UAA codon
Phylogenetic position of the organisms studied. a Phylogeny of eukaryotes including the rhizarian exLh based on 18S rDNA sequences. The maximum likelihood (ML) tree was inferred with RAxML using the GTRGAMMAI substitution model. The values at branches represent RAxML BS values followed by PhyloBayes posterior probabilities (GTRCAT model). b Phylogeny of Fornicata including I. spirale based on a concatenated data set of 18S rDNA and EF-1α, EF2, HSP70, and HSP90 protein sequences. The ML tree was inferred with RAxML using the substitution models GTRGAMMA (for 18S rDNA) and PROTGAMMALG4X (for the protein sequences). The values at branches represent RAxML BS values followed by PhyloBayes posterior probabilities (CAT Poisson model). Maximal support (100/1) is indicated with black dots. Asterisks indicate support values lower than 50% or 0.5, respectively, dashes mark branches in the ML tree that are absent from the PhyloBayes tree