Assembly | APS1 | SRA1 | PGA1 | PGA1.5 | PGA2 |
---|---|---|---|---|---|
Assembly size (Mb) | 400.9 | 376.4 | 376.7 | 400.9 | 403.9 |
Number of scaffolds | 1184 | 3518 | 493 | 287 | 908 |
Scaffold N50 size (Mb) | 1.091 | 0.370 | 22.675 | 24.672 | 24.364 |
Scaffold N50 number | 100 | 243 | 7 | 7 | 7 |
Longest scaffold (Mb) | 7.836 | 2.519 | 35.915 | 37.957 | 38.125 |
Assembly scaffolded | 87.4% | 97.6% | 99.7% | 99.5% | 98.0% |
Number of contigs | 2883 | 13,462 | 13,462 | 2207 | 1589 |
Contig N50 size (Mb) | 0.369 | 0.064 | 0.064 | 0.648 | 1.254 |
Contig N50 number | 249 | 1582 | 1582 | 154 | 78 |
Missing bases | 0.46% | 3.18% | 3.26% | 0.15% | 0.01% |
Number of gaps | 2075 | 13,848 | 16,873 | 2761 | 771 |
Length of gaps (Mb) | 1.864 | 11.975 | 12.277 | 0.582 | 0.046 |
Assembly size (Mb) and % in top 16 scaffolds | 60.5 15.1% | 30.1 8.0% | 375.2 99.6% | 398.6 99.4% | 395.8 98.0% |