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Table 1 Amaranth assembly statistics

From: Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution

Assembly

APS1

SRA1

PGA1

PGA1.5

PGA2

Assembly size (Mb)

400.9

376.4

376.7

400.9

403.9

Number of scaffolds

1184

3518

493

287

908

Scaffold N50 size (Mb)

1.091

0.370

22.675

24.672

24.364

Scaffold N50 number

100

243

7

7

7

Longest scaffold (Mb)

7.836

2.519

35.915

37.957

38.125

Assembly scaffolded

87.4%

97.6%

99.7%

99.5%

98.0%

Number of contigs

2883

13,462

13,462

2207

1589

Contig N50 size (Mb)

0.369

0.064

0.064

0.648

1.254

Contig N50 number

249

1582

1582

154

78

Missing bases

0.46%

3.18%

3.26%

0.15%

0.01%

Number of gaps

2075

13,848

16,873

2761

771

Length of gaps (Mb)

1.864

11.975

12.277

0.582

0.046

Assembly size (Mb) and % in top 16 scaffolds

60.5 15.1%

30.1 8.0%

375.2 99.6%

398.6 99.4%

395.8 98.0%

  1. Full assembly statistics are provided in Additional file 1: Table S1