Feature | Value | |||
---|---|---|---|---|
D. rotundata (v0.1) | A. thaliana (TAIR10) | B. distachyon (v3.1) | O. sativa (v7_JGI 323) | |
Total length (Mbp) | 594.23 | 119.67 | 271.16 | 374.47 |
GC (%) | 35.83 | 36.06 | 46.40 | 43.57 |
Number of scaffolds (≥ 0 bp) | 4723 | 7 | 10 | 14 |
Number of scaffolds (≥ 1000 bp) | 4704 | 7 | 10 | 14 |
Largest scaffold (Mbp) | 13.61 | 30.43 | 75.07 | 43.27 |
N50 (Mbp) | 2.12 | 23.46 | 59.13 | 29.96 |
N75 (Mbp) | 0.77 | 19.70 | 48.59 | 28.44 |
Number of Ns per 100 kb | 282.45a | 155.60 | 155.85 | 44.13 |
Ambiguous bases | 1,413,029 | – | – | – |
Number of genes | 26,198 | 27,416 | 34,310 | 42,189 |
Exons | ||||
Number | 158,059 | 141,044 | 154,104 | 178,353 |
Average number per gene | 6.03 | 5.14 | 4.49 | 4.25 |
Total length (Mbp) | 42.43 | 33.49 | 39.01 | 46.85 |
Average size (bp) | 268.43 | 237.46 | 253.15 | 262.70 |
Average GC (%) | 44.08 | 43.70 | 51.02 | 51.12 |
Introns | ||||
Number | 105,663 | 86,212 | 85,484 | 94,345 |
Average number per gene | 4.03 | 3.14 | 2.49 | 2.25 |
Total length (Mbp) | 83.12 | 17.87 | 47.70 | 53.34 |
Average size (bp) | 630.33 | 157.25 | 398.18 | 391.23 |
Average GC (%) | 32.37 | 32.45 | 38.29 | 37.20 |
Transposable elementsb | ||||
% Total interspersed | 46.07 | 13.32 | 37.39 | 44.40 |
Total interspersed total length (Mbp) | 274.51 | 15.94 | 101.39 | 166.27 |
% Short interspersed nuclear elements (SINEs) | 0.02 | 0.17 | 0.38 | 0.88 |
SINEs total length (Mbp) | 0.13 | 0.20 | 1.02 | 3.31 |
% Long interspersed nuclear elements (LINEs) | 2.43 | 1.07 | 2.91 | 1.29 |
LINEs total length (Mbp) | 14.46 | 1.29 | 7.90 | 4.83 |
% Long terminal repeat (LTR) elements | 22.82 | 6.35 | 19.31 | 21.09 |
LTR elements total length (Mbp) | 135.71 | 7.61 | 52.36 | 78.98 |
% DNA elements | 6.70 | 3.08 | 7.11 | 16.7 |
DNA elements total length (Mbp) | 39.83 | 3.69 | 19.27 | 62.82 |
% Unclassified | 14.20 | 2.64 | 7.68 | 4.36 |
Unclassified total length (Mbp) | 84.38 | 3.16 | 20.84 | 16.32 |