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Table 1 Sequences of non-human sRNAs found in plasma preparations, synthetic sRNA templates, primers and annealing temperatures

From: Small RNA profiling of low biomass samples: identification and removal of contaminants

Name

RNA sequence

Average counts per million in 10 plasma samples

Potential origin of sequence

Primer sequence

Annealing temperature

sRNA 1

(CU)AACAGACCGAGGACUUGAA(U)

133,700

algae

AACAGACCGAGGACTTGAA

57 °C

sRNA 2

ACGGACAAGAAUAGGCUUCGGCU

8000

fungi or plants

ACGGACAAGAATAGGCTTC

54 °C

sRNA 3

GCCUUGGUUGUAGGAUCUGU

8200

plants

GCCTTGGTTGTAGGATCTGT

57 °C

sRNA 4

GCCAGCAUCAGUUCGGUGUG

6800

bacteria

CAGCATCAGTTCGGTGTG

57 °C

sRNA 5

GAGAGUAGGACGUUGCCAGGUU

3900

bacteria

AGTAGGACGTTGCCAGGTT

57 °C

sRNA 6

UUGAAGGGUCGUUCGAGACCAGGACGUUGAUAGGCUGGGUG

3400

bacteria

GAAGGGTCGTTCGAGACC

57 °C

hsa-miR486-5p

UCCUGUACUGAGCUGCCCCGAG

 

human

–*

60 °C

  1. * hsa-miR486-5p specific assay from Quanta BIOSCIENCES