From: Small RNA profiling of low biomass samples: identification and removal of contaminants
Name | RNA sequence | Average counts per million in 10 plasma samples | Potential origin of sequence | Primer sequence | Annealing temperature |
---|---|---|---|---|---|
sRNA 1 | (CU)AACAGACCGAGGACUUGAA(U) | 133,700 | algae | AACAGACCGAGGACTTGAA | 57 °C |
sRNA 2 | ACGGACAAGAAUAGGCUUCGGCU | 8000 | fungi or plants | ACGGACAAGAATAGGCTTC | 54 °C |
sRNA 3 | GCCUUGGUUGUAGGAUCUGU | 8200 | plants | GCCTTGGTTGTAGGATCTGT | 57 °C |
sRNA 4 | GCCAGCAUCAGUUCGGUGUG | 6800 | bacteria | CAGCATCAGTTCGGTGTG | 57 °C |
sRNA 5 | GAGAGUAGGACGUUGCCAGGUU | 3900 | bacteria | AGTAGGACGTTGCCAGGTT | 57 °C |
sRNA 6 | UUGAAGGGUCGUUCGAGACCAGGACGUUGAUAGGCUGGGUG | 3400 | bacteria | GAAGGGTCGTTCGAGACC | 57 °C |
hsa-miR486-5p | UCCUGUACUGAGCUGCCCCGAG |  | human | –* | 60 °C |