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Table 5 Summary of interactions curated in datasets

From: A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

TF interactions within datasets

TF

Number of interactions

PMID

HT methodology

Reference

ArcA

143

24699140

ChIP-chip

[30]

ArgR

426

22082910

ChIP-chip

[29]

ArgR

38

25735747

ChIP-exo

[28]

AscG

9

19633077

gSELEX

[37]

BasR

99

22442305

gSELEX

[38]

CitB

15

18997424

gSELEX

[39]

Cra

14

16115199

gSELEX

[40]

Cra

234

21115656

gSELEX

[41]

CRP

39

16301522

ChIP-chip

[42]

CsgD

31

21421764

gSELEX

[43]

CsiR

126

28061857

ChIP-seq

[16]

Dan

176

20156994

gSELEX

[44]

DpiA

15

18997424

gSELEX

[39]

Fis

228

16963779

ChIP-chip

[45]

FNR

137

17164287

ChIP-chip

[46]

FNR

796

23818864

ChIP-seq and ChIp-chip

[31]

FNR

186

24699140

ChIP-chip

[30]

Fur

473

26670385

ChIP-seq

[33]

Fur

91

25222563

ChIP-exo

[32]

H-NS

1501

23818864

ChIP-chip

[31]

H-NS

101

16963779

ChIP-chip

[45]

H-NS

53

21097887

ChIP-seq

[47]

IHF

1020

23818864

ChIP-chip

[31]

IHF

155

16963779

ChIP-chip

[45]

LeuO

17

19429622

gSELEX

[48]

LexA

69

16264194

ChIP-chip

[49]

Lrp

67

19052235

ChIP-chip

[34]

Lrp

296

28348809

gSELEX

[50]

Nac

537

28061857

ChIP-seq

[16]

NemR

6

18567656

gSELEX

[51]

NsrR

83

19656291

ChIP-chip

[52]

OmpR

68

28061857

ChIP-seq

[16]

OmpR

30

28526842

ChIP-exo

[36]

OmpR

31

26332955

gSELEX

[35]

PdhR

14

17513468

gSELEX

[53]

PgrR

82

23301696

gSELEX

[54]

RcdA

39

23233451

gSELEX

[55]

RstA

34

17468243

gSELEX

[56]

RutR

20

18515344

ChIP-chip

[57]

RutR

9

17919280

gSELEX

[58]

SdiA

212

24645791

gSELEX

[59]

SutR

15

25406449

gSELEX

[60]

TrpR

17

22082910

ChIP-chip

[29]

UvrY

288

26673755

CHIP-exo

[61]

Sigma factors and Rho interactions within datasets

Sigma factors and Rho

Number of interactions

PMID

HT methodology

Reference

RpoD (Sigma70)

1214

16109958

ChIP-chip

[62]

RpoD (Sigma70)

528

16301522

ChIP-chip

[42]

Rho

260

19706412

ChIP-chip

[63]

RpoD (Sigma70)

6350

23818864

ChiP-seq

[31]

RpoH (Sigma32)

82

16892065

ChIP-chip

[64]

RpoH (Sigma32)

44

20602746

ChIP-chip

[65]

RpoS (Sigma38)

91

26020590

ChiP-seq

[66]