Fig. 4

Examples of genes with significantly differentially localized 3′ isoforms. Paired plots on the left show the DF for each soma-dendrite pair (connected by gray lines). The genome browser plots on the right show the read pile-ups for somas (top track; black peaks) compared to dendrites (bottom track; gray peaks; reversed orientation) relative to the annotated gene models from Ensembl (middle track; red). The dendrite-preferred 3′ isoform is indicated by a pink arrow, and the non-preferred isoform is indicated by a blue arrow. Note that for Uck2 and Ube2i, the dendrite-preferred 3′ isoform is a new isoform from [10] and thus is not part of the Ensembl gene models. Genes shown are on the reverse strand and only reverse-strand reads are displayed