Fig. 6
From: Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
The Anopheles funestus cytogenetic photomap of polytene chromosomes with anchored scaffolds from the AfunF1 and AfunF2-IP assemblies. FISH-mapped DNA markers (grey probe identifiers directly above each chromosome) show the density of physical mapping along the chromosome arm subdivisions (labelled with letters A, B, C, etc. directly below each chromosome) and divisions (labelled with numbers 1–46 below the subdivision labels). Scaffolds from the AfunF1 (KB66XXXX identifiers, grey font and thin horizontal lines) and AfunF2-IP (scaffoldXX identifiers, black font and thick horizontal lines) assemblies are ordered along the photomap above each chromosome. Orientation of the scaffolds in the genome, if known, is shown by the arrows below each of the scaffold identifiers. Known polymorphic inversions are shown for chromosome arms 2R, 3R, and 3L