Table 2 Summary of anchoring improvements for seven anophelines with chromosome mapping data
From: Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
Assembly | Mapped scaffolds | Scaffolds added to map by | Total scaffolds added | Mapped scaffolds now with oriented neighbours | Total base pairs added | Percentage of assembly added | Total percentage of assembly anchored | ||
|---|---|---|---|---|---|---|---|---|---|
Synteny | Agouti | SYN + AGO | |||||||
A. albimanus | 31 | 0 | 2 | 0 | 2 | 0 | 2160 | 0.00 | 98.26 |
A. arabiensis | 51 | 4 | 2 | 0 | 6 | 0 | 256,948 | 0.10 | 87.84 |
A. atroparvus | 46 | 5 | 7 | 3 | 9 | 0 | 870,748 | 0.39 | 89.75 |
A. funestus | 202 | 89 | 45 | 34 | 100 | 81 | 26,434,544 | 11.73 | 72.91 |
A. sinensis (Chinese) | 52 | 18 | NA | NA | 18 | 14 | 5,791,225 | 2.62 | 40.41 |
A. stephensi | 99 | 102 | 52 | 45 | 110 | 77 | 47,779,259 | 21.20 | 61.96 |
A. stephensi (Indian) | 118 | 76 | 47 | 33 | 90 | 92 | 10,975,818 | 4.96 | 83.66 |