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Fig. 3 | BMC Biology

Fig. 3

From: LSTrAP-Crowd: prediction of novel components of bacterial ribosomes with crowd-sourced analysis of RNA sequencing data

Fig. 3

Power-law and example of a ribosomal network. a Power-law plot obtained from the expression data of the 17 bacteria. The x-axis shows the node degree (number of co-expression connections of a gene), while the y-axis indicates the frequency of a degree. Pearson correlation coefficient (PCC) > 0.7 was used to decide whether two genes are co-expressed. The two axes are log10-transformed. b Co-expression neighborhood of AEA92696 from Enterococcus faecalis (red square), a 30S ribosomal protein S18, and the 50 most highly co-expressed genes (including AEA92696). Nodes indicate genes, while gray edges connect genes with PCC > 0.7. Blue nodes represent ribosomal genes, green nodes represent genes with “Hypothetical protein” in their description, while gray nodes indicate genes with other functions. c Distribution of PCC values between ribosomal proteins (RP-RP, green bar) and ribosomal proteins and other genes (RP-Other) in the 17 bacteria. The x-axis indicates bacteria, while the y-axis indicates the PCC values

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