Table 1 Genes upregulated at the ribosomal footprint level by at least 30% in Disomic 2 strains

Ribosome homeostasis

ACL4, ARB1, ARX1, BMT5, BRX1, CBF5, DBP10, DBP7, DBP8, DHR2, DRS1, ECM1, EMG1, ESF1, GAR1, GRC3, HAS1, HPM1, IMP3, IPI3, JIP5, KRR1, LOC1, LSG1, MAK11, MAK16, MRT4, NIP7, NOP12, NOP2, NOP4, NSR1, POP5, PUF4, PWP1, RIX1, RIX7, RLP24, RMT2, RPF2, RPL15A, RPL1A, RPL1B, RPL24A, RPL24B, RPL3, RPL8B, RPL9A, RPL9B, RPS22A, RPS5, RPS8B, RRB1, RRP17, SAC3, SFM1, SPB1, SRP40, STM1, TMA19, UTP11, UTP14, UTP23, UTP30, UTP5, UTP9

Protein degradation/quality control

CDC26, CIC1, CUZ1, ECM29, NAS6, PRE1, PRE10, PRE2, PRE4, PRE9, RPN1, RPN4, RPN5, RPN8, RPT3, RPT4, RPT5, SCL1, SMT3, TMC1

Protein folding/chaperones

CCT4, CCT7, HCH1, HSP10, PPT1, SSA2, SSZ1

Trafficking

ARF1, GET3, HOT13, HSV2, MLP1, MYO4, NTF2, NUP100, NUP49, PEX4, RET3, SEC22, SEC72, SRM1, SRP21, TOM7, YKT6, YPT31

Metabolism

AAT1, ACS1, ALD6, ARO10, ASP1, CAB5, CAR1, CAT5, COX7, DFR1, DPH2, ECT1, ERG13, ERG9, FAU1, GEP4, GIP4, GUA1, GUK1, MRI1, NPY1, PDC1, PDC5, PRS1, PRS3, PRS5, SAH1, SES1, SFA1, SOL3, SPE3, SUT2, TDA9, URA5, YHR020W, YJU3

Transcription, translation

CDC33, DEF1, GCD1, HYP2, NET1, PDP3, RPA34, RPA49, RPB7, RPB8, RPC31, RPC40, SLF1, SUP35, TEF1, TFA1, TIF2, TIF5, TOA1, ZPR1

DNA and RNA processing

CWC2, GCD10, HRP1, LHP1, LSM12, LSM5, NAM8, PAB1, PAN3, PRP16, PRP19, PRP8, RRP42, RRP43, RSE1, SEN34, SET1, SNU23, SUB2, SWD1, SWM2, TAD2, TRM11, TRM12, TRM2, TRM8

Chromosome organization/DNA replication and repair

AHC2, CBF2, DSN1, FPR4, GSP1, MAG1, NSE1, PAA1, POL31, RSC4, RTT107, SGS1, TAH11, TRA1

Cell cycle/signaling

BUD2, CCR4, CKA2, CLG1, CLN3, DMA1, HST2, KIN3, KSP1, LTE1, MAD1, NAT5, SCH9, TOS3, TPD3

Redox homeostasis

AHP1, GRX3, HMX1, LOT6, MRS4, TAH18, TSA1, YAP1

Others

EMW1, LRE1, OCA5, PTP2, YPD1

Putative/unknown function

AIM29, ANR2, ECL1, GDS1, NRP1, PMU1, RRT14, UBP5, VPS63, YCR043C, YDR222W, YEL068C, YHR138C, YKR011C, YNL010W, YSC83