Table 1 Summary of genome assembly and annotation statistics
Genomic features | Value |
|---|---|
Total length (bp) | 250,632,892 |
Contig number | 566 |
Contig N50 (bp) | 38,117,870 |
Scaffold number | 560^ |
Scaffold N50 (bp) | 88,747,609* |
L50 | 2 |
GC content (%) | 44.91% |
Maximum scaffold length | 93,706,523 |
Minimum scaffold length | 1727 |
N’s per 100 kb | 3.60 |
Alternative haplotypes, bp (# scaffolds) | 15,743,318 (169) |
Unclassified contigs, bp (# scaffolds) | 20,118,109 (355) |
Putative Y chromosome, bp (# scaffolds) | 2,431,719 (33) |
3 major chromosomes X, 2, and 3, bp (# scaffolds) | 205,167,748 (3) |
Predicted genes | 14,966 |
Predicted transcripts | 16,559 |
5′ UTR | 9791 |
3′ UTR | 9290 |
tRNAs | 503 |