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Fig. 2 | BMC Biology

Fig. 2

From: A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes

Fig. 2

Segmental duplication content in Nile rat and related species (We used the following genome assembly versions: house mouse mm10 = GRCm38 [59], house mouse C57BL = ASM377452v2 (a PacBio long reads-based assembly [56, 60]), Norway rat mRatBN7.2 [61], and white-footed mouse UCI_PerLeu_2.1 [62]). a The total bases annotated as segmental duplication by SEDEF. The total includes all pairwise alignments after filtering for common repeats. b The total number of multi-exon genes duplicated in each of the assemblies for resolved (res.) and collapsed (col.) genes. c Organization of duplicated genes in the Nile rat. Tandemly duplicated genes are in blue; interspersed are in green. Genes in collapsed duplications are indicated as dots in the perimeter. The chromosomes are ordered according to genomic scaffold accessions

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