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Fig. 5 | BMC Biology

Fig. 5

From: The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors

Fig. 5

EccDNA forming regions contain most M. oryzae genes, but not all, and many are associated with presence-absence variation. A Manhattan plot showing the number of encompassing split reads per million junction split reads averaged across biological replicates for each gene in the M. oryzae Guy11 genome. Each dot represents one gene. EccDNA-associated genes with known gene names are labeled according to their normalized encompassing split read count and position in the genome. EccDNA-absent genes with known gene names are labeled with lines pointing to their location in the genome. B Stacked bar plot showing the percentage of eccDNA-absent genes, other genes, and eccDNA-associated genes in the M. oryzae Guy11 genome that had an ortholog in all other 162 M. oryzae genomes analyzed or not. Numbers indicate the number of genes in each category. C Rarefaction analysis of the observed number of genes found fully encompassed by eccDNA forming regions at different subsamples of all found eccDNA forming regions, compared to the same number of randomly selected genomic regions

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