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Table 2 Data collection, phasing, and structure refinement statistics of SsTRIC

From: Ion- and water-binding sites inside an occluded hourglass pore of a trimeric intracellular cation (TRIC) channel

Data collection

CH3HgCl (A15C mutant)

KCl (wild type)

TlNO3 (anomalous)

Wavelength (Ã…)

1.00000

1.00137

1.5418

Beamlinea

SSRF BL17U

SSRF BL17U

Rigaku MicroMax-007

Space group

C 2

C 2

C 2

Resolution (Ã…)

50–2.5 (2.64–2.5)

50–2.2 (2.32–2.2)

50–3.4 (3.52–3.4)

Cell dimensions (Å, °)

a = 152.07

a = 152.07

a = 150.40

b = 87.48

b = 87.73

b = 86.44

c = 173.62

c = 173.06

c = 173.30

β = 108.75

β = 108.90

β = 108.59

R sym

0.211 (0.883)

0.149 (0.604)

0.133 (0.886)

R pim b

0.076 (0.308)

0.075 (0.300)

N/A

I/σ

8.1 (3.9)

7.1 (2.7)

12.1 (2.1)

Completeness (%)

98.8 (96.9)

97.6 (94.8)

88.6 (87.2)

Redundancy

8.9 (8.7)

4.7 (4.6)

5.9 (6.0)

Phasing statistics

 No. of heavy atom sites

6

  

 Figure of merit (before/after DM)

0.258 (0.640)

 

Refinement statistics

 Resolution

 

50–2.2

 

 No. of reflections (no. of reflections in free set)

 

106,561 (2614)

R work (%)

 

21.08

R free (%)

 

22.85

No. atoms (B-factors, Ã…2)

 All atoms

 

9642 (38.1)

 

 Protein

 

9054 (37.0) (6 chains)

 Cation

 

33 K+ (77.9)

 Water

 

381 (46.0)

 Others (detergent)

 

174 (68.4)

 Ramachandran plot (%)c

 

96.8/2.5/0.7

 RMSD bond length (Å)

 

0.007

 RMSD bond angles (°)

 

1.22

  1. The R sym , R pim , I/σ, completeness, and redundancy are presented as the statistics for overall and outmost shell (in parentheses)
  2. a SSRF Shanghai Synchrotron Radiation Facility
  3. b R pim is the precision-indicating (multiplicity-weighted) R sym reported by the Scala program. R pim  = ∑ hkl [1/(N − 1)]1/2∑ i |I i (hkl) − 〈I(hkl)〉|/∑ hkl ∑ i I i (hkl) The HKL2000 program used to process TlNO3 data did not report R pim statistics
  4. cPercentage of residues in most favored, additional allowed, and generously allowed regions in Ramachandran plot. No residues are observed in the disallowed region