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Fig. 2 | BMC Biology

Fig. 2

From: Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations

Fig. 2

Definition and characteristics of 15 chromatin states in rumen epithelial primary cells (REPC). a, b Definitions and abbreviations of 15 chromatin states, respectively. c Emission probabilities of individual epigenomic marks for each chromatin state. d Genomic coverages of chromatin states. e Enrichments of chromatin states for diverse genomic annotations, including CpG islands, gene contents (promoters were defined as ± 1 kb around transcription start site, TSS), expressed genes (FPKM > 0, n = 14,839) in REPC, repressive genes (FPKM = 0, n = 9777) in REPC, transcription factors (TF), genes specifically highly expressed in REPC (REPC_SG, n = 1230), and common repeats. f DNA methylation across 15 chromatin states in REPC. g, h Enrichments of chromatin states around ± 2 kb of TSS and TES of expressed genes, repressive genes, and REPC-SG genes, respectively. i Probabilities of chromatin state transitions learned from ChromHMM, reflects the proximal genomic locations among chromatin states

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BMC Biology

ISSN: 1741-7007

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