From: Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes
Sample | Sample age (14C dates: non-italics; archeological ages: italics) | Location | Mean coverage | Coverage ≥ 1× in % | Coverage ≥ 3× in % | Genotype (new) | Branch |
---|---|---|---|---|---|---|---|
R7546-671 | 19th–20th century CE | St. Petersburg, Russia | 16.51 | 97.16 | 94.96 | 2F | 2F |
UF11 | 18th century CE | Sant Llàtzer, Barcelona, Spain | 6.71 | 85.67 | 61.80 | 3I-1 | 3 |
UF8 | 16th century CE | Sant Llàtzer, Barcelona, Spain | 1.46 | 67.52 | 18.99 | 3I-1 | 3 |
UF21 | 1431–1611 cal CE | Sant Llàtzer, Barcelona, Spain | 4.11 | 92.14 | 67.70 | 3I-1 | 3 |
UF25 | 1423–1466 cal CE | Sant Llàtzer, Barcelona, Spain | 33.09 | 97.40 | 95.73 | 3K-0 | 0 |
JDS097 | 1231–1384 cal CE | Hospital of St. John, Cambridge, UK | 12.81 | 96.89 | 94.27 | 3I-1 | 3 |
PAVd’09_I.5 | 1283–1396 cal CE | Valle da Gafaria, Lagos, Portugal | 96.82 | 97.40 | 97.44 | 3I-1 | 3 |
Bergen | 1268–1388 cal CE | Nonneseter, Bergen, Norway | 110.61 | 97.45 | 97.44 | 3I-1 | 3 |
UF700 | 1035–1165 cal CE | Sant Llàtzer, Barcelona, Spain | 19.45 | 97.53 | 96.91 | 3I-1 | 3 |
UF101 | 1027–1157 cal CE | Sant Llàtzer, Barcelona, Spain | 21.28 | 13.70 | 97.39 | 3I-1 | 3 |
UF800 | 12th–early 13th century CE | Sant Llàtzer, Barcelona, Spain | 3.34 | 86.27 | 52.63 | 2F | 2F |
COR_XVIII | 12th–early 13th century CE | Cordiñanes de Valdeón, León, Spain | 2.49 | 67.28 | 32.39 | 3K-0 | 0 |
UF703 | 1040–1208 cal CE | Sant Llàtzer, Barcelona, Spain | 26.94 | 97.44 | 96.19 | 3K-0 | 0 |
KirkHill | 1030–1155 cal CE | Kirk Hill, St Andrews, Scotland | 6.86 | 94.85 | 81.01 | 3I-1 | 3 |
UF803 | 1023–1157 cal CE | Sant Llàtzer, Barcelona, Spain | 6.18 | 91.01 | 69.77 | 3K-0 | 0 |
CHRY044 | 1034–1175 cal CE | Cherry Hinton, Cambridge, UK | 18.09 | 96.31 | 92.35 | 3I-1 | 3 |
BEL024 | 1035–1203 cal CE | Byhau, Magileu, Belarus | 43.86 | 97.71 | 97.51 | 3Q (New*) | 4 |
CHRY023 | 1034–1162 cal CE | Cherry Hinton, Cambridge, UK | 7.01 | 96.53 | 89.75 | 3I-1 | 3 |
EDI006 | 575–650 cal CE | Edix Hill, Cambridgeshire, UK | 23.71 | 97.64 | 97.43 | 3I-1 | 3 |