Fig. 1
From: The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching
SNP phylogeny. A Mid-point rooted maximum likelihood tree produced from 143,123 concatenated SNP positions with data from a minimum of 55 samples. The tree was produced using PhyML with the GTR evolutionary model. Branch support was evaluated with the Bayesian-like transformation of approximate likelihood ratio test (aBayes). Genetic distance is shown below the tree. Plasmodium vivax isolates are denoted as coloured circles by their country of sample origin. A tree with specific sample IDs is available in Additional file 2: Figure S9B. B Magnification of the Plasmodium simium clade (as in A). C Map showing the geographic locations at which the P. simium samples were collected