Dependent variable: | |||||||
---|---|---|---|---|---|---|---|
PGA | CN Segments | SVs | INDELs | ID8 | ID6 | ||
Model Type | LMM | NB | NB | NB | ZINB | ZINB | |
Count model: (Intercept) | Coefficient | 5.37 | 4.44 | 0.257 | 3.16 | 0.581 | 1.62 |
95% CI | (−7.32,18.1) | (4.03,4.84) | (−1.36,1.87) | (2.67,3.65) | (−1.44;2.61) | (0.355,2.88) | |
p value | 0.408 | 1.16×10−100∗∗∗ | 0.755 | 3.04×10−41∗∗∗ | 0.574 | 0.0121∗ | |
Count model: Age | Coefficient | 0.0490 | −0.000657 | 0.0281 | 0.00315 | 0.0235 | −0.00354 |
95% CI | (−0.084,0.182) | (−0.00398,0.00267) | (0.00250,0.0537) | (−0.00049,0.00679) | (−0.00840,0.0554) | (−0.0130,0.00596) | |
p value | 0.472 | 0.699 | 0.0314∗ | 0.0903 | 0.149 | 0.465 | |
Count model: | Coefficient | 5.83 | 0.241 | 0.704 | 0.449 | 0.575 | 0.577 |
log(SBS2/13) | 95% CI | (4.34,7.32) | (0.200,0.282) | (0.468,0.940) | (0.391,0.507) | (0.268,0.882) | (0.419,0.735) |
p value | 7.55×10−14∗∗∗ | 1.20×10−30∗∗∗ | 5.00×10−9∗∗∗ | 3.03×10−45∗∗∗ | 2.44×10−4∗∗∗ | 8.07×10−13∗∗∗ | |
Count model: TP53 | Coefficient | 11.0 | 0.131 | 1.26 | 1.08 | 0.123 | 2.16 |
95% CI | (7.15,14.9) | (0.039,0.224) | (0.502,2.02) | (0.502,1.65) | (−0.024,0.271) | (0.258,4.07) | |
p value | 3.70×10−8∗∗∗ | 5.27×10−3∗∗ | 0.00114∗∗ | 2.37×10−4∗∗∗ | 0.102 | 0.0260∗ | |
Count model: | Coefficient | −0.156 | −0.158 | −0.347 | |||
log(SBS2/13):TP53 | 95% CI | (−0.268,−0.045) | (−0.241,−0.0742) | (−0.622,−0.0729) | |||
p value | 0.00610∗∗ | 2.17×10−4∗∗∗ | 0.0131∗ | ||||
Count model: | Coefficient | -0.00462 | −0.00354 | ||||
Age:log(SBS2/13) | 95% CI | (-0.00845,-0.000799) | (−0.00834,0.00126) | ||||
p value | 0.0178∗ | 0.148 | |||||
Zero model: (Intercept) | Coefficient | −0.684 | 1.07 | ||||
95% CI | (−0.839,−0.530) | (0.902,1.24) | |||||
p value | 4.19×10−18∗∗∗ | 4.23×10−36∗∗∗ | |||||
AIC | 6710.3 | 10,058.3 | 8687.9 | 10448.8 | 6356.6 | 3266.8 | |
Log likelihood | −3349.1 | −5023.2 | −4335.9 | −5217.4 | −3170.3 | −1625.4 | |
Num. obs. | 725 | 725 | 717 | 725 | 725 | 725 | |
Num. tumour types | 26 | 26 | 26 | 26 | 26 | 26 |