Table 1 Assembly statistics, BUSCO assessment and Hi-C analysis of loach Misgurnus anguillicaudatus genome
Assembly feature | Contig length (bp) | Contig number | Scaffold length (bp) | Scaffold number | |
|---|---|---|---|---|---|
N90 | 1,207,751 | 267 | 1,207,751 | 266 | |
N50 | 4,463,776 | 84 | 4,463,776 | 84 | |
Total length | 1,173,940,613 | - | 1,173,940,614 | - | |
Number (≥100bp) | - | 665 | - | 664 | |
Number (≥2kb) | - | 647 | - | 646 | |
Max length | 1,719,164 | - | 17,196,164 | - | |
BUSCO assessment | Complete BUSCOs (C) | Complete and single-copy BUSCOs (S) | Complete and duplicated BUSCOs (D) | Fragmented BUSCOs (F) | Missing BUSCOs (M) |
Proteins | 4325 (94.35%) | 3841 (83.79%) | 484 (10.56%) | 64 (1.40%) | 195 (4.25%) |
Chromosome-level genome assembly | Number of chromosomes/contigs | Contig N50 (bp) | Scaffold N50 (bp) | Total size | |
25/357 | 3,833,009 | 42,952,821 | 1.10 Gb | ||