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Table 1 Summary of datasets used in this study

From: Integrative single-cell RNA-seq analysis of vascularized cerebral organoids

Protocols

Authors

Phenotype

SRA Accession ID/GEO Datasets ID

Day

hETV2 overexpression

Cakir et al

Non-vascularized cerebral organoid

SRS5079104

70 days

Vascularized cerebral organoid

SRS5079105

Co-culture with HUVEC (65 d)

Shi et al

Non-vascularized cerebral organoid

SRS6066824; SRS6066825; SRS4752357

65 days

Vascularized cerebral organoid

SRS6066826; SRS6066827; SRS4752359

Co-culture with HUVEC (100 d)

Shi et al

Non-vascularized cerebral organoid

SRS4752358; SRS6066828; SRS6066829

100 days

Vascularized cerebral organoid

SRS4752360; SRS6066830; SRS6066831

Assembloid

Sun et al

Vascular organoid

SRR15992285; SRR15992286

40 days

(Fetal brain)

Trevino et al

(Fetal brain)

GSM4944143; GSM4944144

PCW16

GSM4944145; GSM4944146

PCW20

GSM4944147; GSM4944148

PCW21

GSM4944149; GSM4944150

PCW24

  1. SRA Accession ID; identifier of the NCBI Sequence Read Archive database
  2. GEO Datasets ID; identifier of the NCBI Gene Expression Omnibus database