Fig. 8
From: Imputation strategies for genomic prediction using nanopore sequencing
Change in body weight genomic estimated breeding values (GEBV) quartile rankings between the HD SNP array GEBVs and GEBVs derived from five different Oxford Nanopore Technologies (ONT) sequencing coverages. ONT GEBVs were derived using either GLIMPSE or QUILT for genotype imputation. Three different imputation reference panels were used: The first reference panel included all 48 million SNP; the second reference panel used a minor allele frequency (MAF) filter of > 0.2 and had 9.5 million SNP. The third reference panel included only the 700,000 SNP in the bovine HD SNP array