Table 1 Details of the SNP panels using the different minor allele frequency (MAF) filters
From: Imputation strategies for genomic prediction using nanopore sequencing
SNP panel name | MAF cut-off | Number of animals | Number of SNP | Mean distance between markers (bp) |
|---|---|---|---|---|
Bovine HD SNP | NA | 1208 | 641,163 | 4212 |
No MAF filter | 0 | 1208 | 48,203,338 | 56 |
MAF > 0.1 | 0.1 | 1208 | 15,000,408 | 180 |
MAF > 0.2 | 0.2 | 1208 | 9,544,194 | 283 |
MAF > 0.3 | 0.3 | 1208 | 4,575,736 | 590 |