Table 1 Quality comparison of the Cx. quinquefasciatus genome assemblies. J2 represents the original assembly [28], which was then scaffolded using Hi-C data to generate J3 [8]. J5 is the new genome assembly presented here
Assembly | BUSCO v3.0.2 diptera_odb10 | Contig N50 | Scaffold N50 | Total Length | QV |
|---|---|---|---|---|---|
J2 | C:93.9%[S:89.9%,D:4.0%],F:1.7%,M:4.4%,n:3285 | 28,546 | 486,756 | 579,042,118 | 19.495 |
J3 all scaffolds | C:93.5%[S:91.2%,D:2.3%],F:1.9%,M:4.6%,n:3285 | 28,546 | 190,989,159 | 560,547,476 | 18.921 |
J3 chromosomes | C:91.1%[S:90.2%,D:0.9%],F:1.7%,M:7.2%,n:3285 | 28,546 | 190,989,159 | 523,187,415 | 18.905 |
J5 all scaffolds | C:93.8%[S:93.1%,D:0.7%],F:0.8%,M:5.4%,n:3285 | 2,875,282 | 201,550,677 | 573,230,032 | 29.201 |
J5 chromosomes | C:93.6%[S:92.9%,D:0.7%],F:0.8%,M:5.6%,n:3285 | 2,875,282 | 201,550,677 | 559,588,684 | 29.201 |