Fig. 2
From: Pangenome analysis reveals transposon-driven genome evolution in cotton
eQTL analysis based on the pangenome and enhanced discovery of causal variation. a Bar plot showing significant eQTLs identified by PAVs and SNPs at different fiber developmental stages. b Distance of the significant variation from the TSS of the associated genes. c An example of a PAV lead-eQTL for the Garb_10G032080 gene. The y-axis represents the significance of the association. d Boxplot of the gene expression levels of different PAV alleles at different fiber developmental stages