Fig. 2

TE divergence landscapes and scaled profiles. a L. migratoria TEs landscape. The x-axis shows the level of divergence (Kimura 2-parameter distance) between each identified TE copy. The y-axis shows the proportion of the genome occupied by each bin. NA: Some TE annotation results not recognized by the script when drawing the landscape. b A. rhodopa TEs landscape. c Comparison of copy numbers of TEs shared by two species (copy number > 500). A dot represents a shared TE. d Repeat profiles of top 10 shared TEs present in two genomes. The x-axis represents the loci of the consensus sequence, and the y-axis is the depth of coverage for each position. The deeper the red color of the profile is the higher the coverage of reads. The repeat profiles of the remaining 31 shared TEs are shown in Fig. S2